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Reptilia    Squamata (part-snakes)    Crotalidae  

Timber Rattlesnake
Crotalus horridus Linnaeus, 1758
KROH-tah-lus — HOR-ih-dus

SSAR 9th Edition Comments:
There are no current SSAR comments for this taxon.

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Taxonomic Etymology:
Named for its formidable size.
Crotalus — From Greek: κρόταλον (krotalon) = “rattle” or “castanet”. This refers to the rattle at the end of the tail, a defining characteristic of rattlesnakes. So Crotalus means “rattler.”
horridus — From Latin: horridus = “dreadful,” “terrible,” or “bristly” (from horrere, meaning “to shudder” or “to bristle”). This word was often used to describe things that inspired fear or awe.

First instance(s) of published English names:
Rattle-Snake (Vipera caudisona americana: Catesby, Mark and Cromwell Mortimer. 1753. IX. A Continuation of an Account of an Essay Towards a Natural History of Carolina and the Bahama Islands. By Mark Catesby, F. R. S. with Some Extracts out of the Eighth Set. By Dr. Mortimer, Secr. R. S. Philosophical Transactions 39():251-258); Rattle-Snake (Vipera caudisona americana: Catesby, Mark. 1754. The Natural History of Carolina, Florida and the Bahama Islands: Containing the Figures of Birds, Beasts, Fishes, Serpents, Insects, and Plants: Particularly the Forest-trees, Shrubs, and other Plants, not Hitherto Described, or Very Incorrectly Figured by Authors. Together with Their Descriptions in English and French. To which, are Added Observations on the Air, Soil, and Waters: with Remarks upon Agriculture, Grain, Pulse, Roots, &c. To the Whole, is Prefixed a New and Correct Map of the Countries Treated of. , London. pp.); Rattle Snake (Crotalus horridus: Forster, John R. 1771. A systematic catalogue of all the known plants of English North-America or, a flora Americae Septentrionalis. Pages in From Forster's translation of Bossu, Travels through that part of North America formerly called Louisiana, Vol. 1. T. Davies, London, England. pp.); Rattlesnake (Crotalus horridus: Pennant, Thomas. 1785. Artic Zoology. Henry Hughs, London. pp.); Great Rattlesnake (Crotalus horridus: Pennant, Thomas. 1785. Artic Zoology. Henry Hughs, London. pp.); Rattle-Snake (Crotalus horridus: Barton, Benjamin S. 1793. An account of the most effectual means of preventing the deleterious consequences of the bite of the Crotalus horridus, or Rattle-Snake. Transactions of the American Philosophical Society 3():100-115); Rattle Snake (Crotalus horridus: Morse, Jedidiah. 1794. The American Geography of, a view of the Present Situation of the United State of America. John Stockdale, Piccadilly, London. pp.); Bluetail Rattlesnake (Crotalinus cyanurus: Rafinesque, Constantine S. 1818. Further account of discoveries in natural history, in the western states. The American Monthly Magazine and Critical Review 4():39-42); Banded Rattle Snake (Crotalus horridus: James, Edwin. 1823. Account of an expedition from Pittsburgh to the Rocky Mountains, performed in the years 1819, 1820. By order of the Hon. J. C. Calhoun, Secretary of War, under the command of Maj. S. H. Long, of the United States Top. Engineers. Compiled from the notes of Major Long, Mr. T. Say, and other gentlemen of the party by Edwin James, botanist and geologist to the expedition. In three volumes. [Volume 1]. Longman, Hurst, Rees, Orme and Brown, London, England. 344pp.); Banded Rattle-snake (Crotalus durissus: Harlan, Richard. 1827. Genera of North American Reptilia, and a synopsis of the species. Journal of the Academy of Natural Sciences of Philadelphia 5(2):317-372); Diamond Rattle-snake (Crotalus horidus: Harlan, Richard. 1827. Genera of North American Reptilia, and a synopsis of the species. Journal of the Academy of Natural Sciences of Philadelphia 5(2):317-372); Lozenge Spotted Rattle-snake (Crotalus durissus: Gray, John E. 1830. A synopsis of the species of the class reptilia. Pages 1-110 in The Animal Kingdom Arranged in Conformity with its Organization by the Baron Cuvier, member of teh Institute of France, with Additional Descriptions of all the Species Hitherto Named, and of many not before noticed. Ninth Volume. Whittaker, Treacher, and Company, London, England. pp.); Common Rattle Snake (Crotalus horridus: Gray, John E. 1830. A synopsis of the species of the class reptilia. Pages 1-110 in The Animal Kingdom Arranged in Conformity with its Organization by the Baron Cuvier, member of teh Institute of France, with Additional Descriptions of all the Species Hitherto Named, and of many not before noticed. Ninth Volume. Whittaker, Treacher, and Company, London, England. pp.); Striped Rattle-snake (Crotalus durissus: Griffith, Edward and Edward Pidgeon. 1831. The class reptilia arranged by the Baron Cuvier, with specific descriptions. Part 2. Whittaker, Treacher, and Company, London. 1-481pp.); Banded Rattle-snake (Crotalus horridus: Griffith, Edward and Edward Pidgeon. 1831. The class reptilia arranged by the Baron Cuvier, with specific descriptions. Part 2. Whittaker, Treacher, and Company, London. 1-481pp.); Banded Rattle Snake (Crotalus durissus: Storer, D. H. 1839. Reports on the Ichthyology and Herpetology of Massachusetts. Reports on the Fishes, Reptiles and Birds of Massachusetts. Published Agreeably to an Order of the Legislature, by the Commissioners on the Zoological and Botanical Survey of the State. Dutton and Wentworth, State Printers, Boston, Massachusetts. pp.); Northern Rattlesnake (Crotalus durissus: Kay, De, James E. 1842. Zoology of New-York, or, The New-York Fauna: Comprising Detailed Descriptions of All the Animals Hitherto Observed within the State of New-York, with Brief Notices of those Occasionally Found Near its Borders, and Accompanied by Appropriate Illustrations. Volume 1, Part 3 (Reptiles and Amphibians). W. & A. White & J. Visscher, Albany, New York. pp.); Rattlesnake (Crotalus durissus: Baird, Spencer F. 1854. Serpents of New-York; With a Notice of a Species not Hitherto Included in the Fauna of the State. C. Van Benthuysen, Albany, New York. pp.); Banded Rattle-snake (Crotalus horridus: England, Royal College of Surgeons of. 1859. Descriptive catalogue of the specimens of natural history in spirit contained in the Museum of the Royal college of surgeons of England. Vertebrata: Pisces, Reptilia, Aves, Mammalia. Taylor and Francis, London, England. pp.); Cascavella (Crotalus horridus: England, Royal College of Surgeons of. 1859. Descriptive catalogue of the specimens of natural history in spirit contained in the Museum of the Royal college of surgeons of England. Vertebrata: Pisces, Reptilia, Aves, Mammalia. Taylor and Francis, London, England. pp.); Banded Rattlesnake (Crotalus durissus: Allen, J. A. 1869. Catalogue of the reptiles and batrachians found in the vicinity of Springfield, Mass., with notices of all the other species known to inhabit the state. Proceedings of the Boston Society of Natural History 12(1868-1869):171-204); Northern Rattlesnake (Crotalus horridus: Yarrow, Henry C. 1876. List of Skeletons and Crania in the Section of Comparative Anatomy of the United States Army Medical Museum for use during the International Exhibition of 1876 in Connection with the Representation of the Medical Department U.S. Army. Army Medical Museum, Washington, D. C. pp.); Banded Rattlesnake (Crotalus horridus: Yarrow, Henry C. 1876. List of Skeletons and Crania in the Section of Comparative Anatomy of the United States Army Medical Museum for use during the International Exhibition of 1876 in Connection with the Representation of the Medical Department U.S. Army. Army Medical Museum, Washington, D. C. pp.); Banded Rattlesnake (Crotalus horridus: Jordan, David Starr. 1876. Manual of the Vertebrates of the Northern United States: Including the District East of the Mississippi River, and North of North Carolina and Tennessee, Exclusive of Marine Species. Jansen, McClurg, and Company, Chicago, Illinois.. 342pp.); Northern Rattlesnake (Crotalus horridus: Jordan, David Starr. 1876. Manual of the Vertebrates of the Northern United States: Including the District East of the Mississippi River, and North of North Carolina and Tennessee, Exclusive of Marine Species. Jansen, McClurg, and Company, Chicago, Illinois.. 342pp.); Banded Rattlesnake (Crotalus horridus: Yarrow, Henry C. 1882. Check list of North American Reptilia and Batrachia with catalogue of specimens in U. S. National Museum. Bulletin of the United States National Museum (24):1-249); Banded Rattle Snake (Crotalus horridus: Davis, N. S., and Frank L. Rice. 1883. List of Batrachia and Reptilia of Illinois. Bulletin of the Chicago Academy of Sciences 1(3):25–32); Northern Rattle Snake (Crotalus horridus: Davis, N. S., and Frank L. Rice. 1883. List of Batrachia and Reptilia of Illinois. Bulletin of the Chicago Academy of Sciences 1(3):25–32); Timber Rattlesnake (Crotalus horridus: Garman, H. 1892. A synopsis of the reptiles and amphibians of Illinois. Illinois Laboratory of Natural History Bulletin 3():215-403); Cane Rattler (Crotalus horridus: Beyer, George. 1900. Louisana herpetology. Proceedings of the Louisiana Society of Naturalists 1897-1899():24-46); Rattler (Crotalus horridus: Fowler, Henry W. 1907. The amphibians and reptiles of New Jersey. MacCrellish and Quigley, Trenton, N. J.. 29-250pp.); Rattle Snake (Crotalus horridus: Fowler, Henry W. 1907. The amphibians and reptiles of New Jersey. MacCrellish and Quigley, Trenton, N. J.. 29-250pp.); Black Rattlesnake (Crotalus horridus: Stejneger, Leonhard H. and Thomas Barbour. 1917. A Checklist of North American Amphibians and Reptiles. Harvard University Press, Cambridge, Massachusetts. pp.); Canebreak Rattlesnake (Crotalus horridus: Stejneger, Leonhard H. and Thomas Barbour. 1917. A Checklist of North American Amphibians and Reptiles. Harvard University Press, Cambridge, Massachusetts. pp.); Timber Rattlesnake (Crotalus horridus: Schmidt, Karl Peterson and D. D. Davis. 1941. Field Book of Snakes of the United States and Canada. C.P. Putnam and Sons, New York. 365pp.); Canbrake Rattlesnake (Crotalus horridus atricaudatus: Schmidt, Karl Peterson and D. D. Davis. 1941. Field Book of Snakes of the United States and Canada. C.P. Putnam and Sons, New York. 365pp.); Timber Rattlesnake (Crotalus horridus horridus: Schmidt, Karl Peterson and D. D. Davis. 1941. Field Book of Snakes of the United States and Canada. C.P. Putnam and Sons, New York. 365pp.); The Common Timber Rattlesnake (Crotalus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Common Rattler (Crotalus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Common Rattlesnake (Crotalus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); The Banded Rattlesnake (Crotalus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Timber Snake (Crotalus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Banded Rattler (Crotalus horridus atricaudatus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Timber Rattler (Crotalus horridus atricaudatus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Common Rattler (Crotalus horridus atricaudatus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Timber Rattlesnake (Crotalus horridus atricaudatus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Common Rattlesnake (Crotalus horridus atricaudatus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); American Viper (Crotalus horridus atricaudatus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Pit Viper (Crotalus horridus atricaudatus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Northern Rattler (Crotalus horridus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Common Timber Rattlesnake (Crotalus horridus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Mountain Rattlesnake (Crotalus horridus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Timber Rattler (Crotalus horridus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Mountain Timber Rattler (Crotalus horridus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Velvet Tail (Crotalus horridus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Timber Rattlesnake (Crotalus horridus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Northern Rattlesnake (Crotalus horridus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Banded Rattler (Crotalus horridus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Mountain Rattler (Crotalus horridus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Velvet-tail Rattler (Crotalus horridus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Poison Viper (Crotalus horridus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186); Northern Banded Rattlesnake (Crotalus horridus horridus: Wright, Albert Hazen. 1950. Common names of the snakes of the United States. Herpetologica 6(6):141-186);

Taxon Links:

  
Catalog of American Amphibians and Reptiles
  
The Reptile Database
  
NatureServe
  
iNaturalist
  
GenBank
  
USGS - Nonindigenous Aquatic Species Database

Selected References:
1758 Linné, Carl von (=Linneaus). Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species cum characteribus, differentiis, synonymis, locis. [System of Nature through the three kingdoms of nature, according to classes, orders, genera, species with characters, differences, synonyms, places.]. 10th Edition, Volume 1, L. Salvius, Stockholm. iv + 826pp.
1940 Gloyd, Howard K. The rattlesnakes, genera Sistrurus and Crotalus. Chicago Academy of Sciences Special Publication 4(1):1-266
1953 Minton, Sherman A., Jr. Variation in venom samples from Copperheads (Agkistrodon contortrix mokeson) and Timber Tattlesnakes (Crotalus horridus horridus). Copeia 1953(4):212-215
1956 Klauber, Laurence M. Rattlesnakes. Their Habits, Life Histories, and Influence on Mankind. Volume 2. University of California Press, Berkeley, California. 1476pp.
1972 Klauber, Laurence M. Rattlesnakes. Their Habits, Life Histories, and Influence on Mankind. 2 Vols. 2nd ed. University of California Press, Berkeley and Los Angeles. pp.
1972 Pisani, George R., Joseph T. Collins, and Stephen R. Edwards. A re-evaluation of the subspecies of Crotalus horridus. Transactions of the Kansas Academy of Science 75(3):255-263
1972 Baker, Robert J., George A. Mengden, and James J. Bull. Karyotypic studies of thirty-eight species of North American snakes . Copeia 1972(2):257-265
1980 Collins, Joseph T. and James L. Knight. Crotalus horridus. Catalogue of American Amphibians and Reptiles (253):1-2
1985 Fitch, Henry S. Observations on rattle size and demography of Prairie Rattlesnakes (Crotalus viridis) and Timber Rattlesnakes (Crotalus horridus) in Kansas. Occasional Papers of the University of Kansas Museum of Natural History (118):1-11
1986 Brown, C. W. and C. H. Ernst. A study of variation in eastern Timber Rattlesnakes, Crotalus horridus Linnae (Serpentes: Viperidae). Brimleyana :57-74
1991 Thireau, Michel. Types and historically important specimens of rattlesnakes in the Museum National D'Histoire Naturelle (Paris). Smithsonian Herpetological Information Service (87):1-10
1991 Collins, Joseph T. Amphibians and reptiles in the upper Mississippi river valley: Systematic and distributional problems. Journal of the Tennessee Academy of Science 66(4):149-152
1993 Riedle, J. Daren. Distribution of the Timber Rattlesnake (Crotalus horridus) in Chautauqua, Elk and Montgomery Counties, Kansas. Kansas Department of Wildlife and Parks, Pratt. 13pp.
1993 Riedle, J. Daren. Distribution of the Timber Rattlesnake (Crotalus horridus) in Chautauqua, Elk, and Montgomery counties, Kansas. Privately printed, Emporia, Kansas. 8pp.
1993 Brown, William S. Biology, status, and management of the Timber Rattlesnake (Crotalus horridus): A guide for conservation. Society for the Study of Amphibians and Reptiles: Herpetological Circular (22):
1994 Riedle, J. Daren. Distribution of the Timber Rattlesnake (Crotalus horridus) in Chautauqua, Elk, and Montgomery counties, Kansas. Kansas Herpetological Society Newsletter (95):43051
1998 Bushar, Lauretta M., Howard K. Reinert, and Larry Gelbert. Genetic variation and gene flow within and between local populations of the Timber Rattlesnake, Crotalus horridus. Copeia 1998(2):411-422
2001 Bushar, Lauretta M., Marianne Maliga, and Howard K. Reinert. Cross-species amplification of Crotalus horridus microsatellites and their application in phylogenetic analysis. Journal of Herpetology 35(3):532-537
2002 Fitch, Henry S. A comparison of growth and rattle string in three species of rattlesnakes. Scientific Papers of the Natural History Museum, University of Kansas (24):1-6
2003 Clark, A. M., Paul E. Moler, E. E. Possardt, Alan H. Savitzky, William S. Brown, and Brian W. Bowen. Phylogeography of the Timber Rattlesnake (Crotalus horridus) based on mtDNA sequences. Journal of Herpetology 37(1):145-154
2008 Martin, William H., William S. Brown, Earl Possardt, and John B. Sealy. Biological variation, management units, and a conservation action plan for the Timber Rattlesnake (Crotalus horridus). Pages in The Biology of Rattlesnakes. Loma Linda University Press, Loma Linda, California. pp.
2018 Stengle, Anne. Habitat selection, connectivity, and population genetics of a Timber Rattlesnake (Crotalus horridus) metapopulation in southwestern Massachusetts and New England. Dissertation. University of Massachusetts, Amherst. 235pp.
2022 Rhodes, Chaz, Willard Haunfelder, and Bradley E. Carlson. Citizen science reporting indicates geographic and phenotypic drivers of road use and mortality in a threatened rattlesnake. Current Zoology 69(3):264–276
2024 Advertisement Science logo Main content starts here Reference #1 Back To Vol. 383, No. 6685 Full access Research Article EVOLUTION Share on The macroevolutionary singularity of snakes Pascal O. Title https://orcid.org/0000-0002-6316-0736, Sonal Singhal, [...] , and Daniel L. Rabosky https://orcid.org/0000-0002-7499-8251+17 authors Authors Info & Affiliations Science 22 Feb 2024 Vol 383, Issue 6685 pp. 918-923 DOI: 10.1126/science.adh2449 22,159 92 Metrics Total Downloads 22,159 Last 6 Months 4,199 Last 12 Months 8,099 Total Citations 92 Last 6 Months 28 Last 12 Months 51 Information & Authors Metrics & Citations View Options References Figures Share Editor’s summary Snakes are important members of today’s ecosystems and, together with lizards, make up one-third of the vertebrate biota. Their iconic status largely comes from their morphology and role as impressive and varied predators. Title et al. looked at the evolution of the group and used a large number of natural history diet observations to explore their role in ecosystems. They found that a pulse of evolutionary innovation that occurred at the origin of snakes more than 150 million years ago led to an expansion of diet in squamate reptiles, which had cascading impacts on ecosystems that persist today. —Sacha Vignieri Abstract Snakes and lizards (Squamata) represent a third of terrestrial vertebrates and exhibit spectacular innovations in locomotion, feeding, and sensory processing. However, the evolutionary drivers of this radiation remain poorly known. We infer potential causes and ultimate consequences of squamate macroevolution by combining individual-based natural history observations (>60,000 animals) with a comprehensive time-calibrated phylogeny that we anchored with genomic data (5400 loci) from 1018 species. Due to shifts in the dynamics of speciation and phenotypic evolution, snakes have transformed the trophic structure of animal communities through the recurrent origin and diversification of specialized predatory strategies. Squamate biodiversity reflects a legacy of singular events that occurred during the early history of snakes and reveals the impact of historical contingency on vertebrate biodiversity. SIGN UP FOR THE AWARD-WINNING SCIENCEADVISER NEWSLETTER The latest news, commentary, and research, free to your inbox daily Related podcast What makes snakes so special, and how space science can serve all BY Sarah Crespi, Christie Wilcox, Sean Cummings, Ariana Remmel Podcast22 Feb 2024 From a phylogenetic perspective, snakes are indisputably nested within lizards (1, 2) and are simply one example of a particularly species-rich and cosmopolitan group of “scaled reptiles” (Squamata). Yet, unlike lizards, snakes engage with human emotions in a visceral manner unmatched by almost any other group of organisms and for this reason have played important cultural roles in human societies (3). Most readily known for their lack of limbs and unique prey-capture strategies, snakes exhibit an incredible degree of ecomorphological diversity and specialization. The ~4000 extant snake species include shovel-snouted burrowers that hunt desert scorpions, slender arboreal predators that prey on tree snails, and paddle-tailed marine forms that probe reef crevices for fish eggs and eels. However, more than 25 clades of lizards have independently evolved limblessness (4), and other lineages also evolved dietary specialization, venom, highly mobile skulls, and/or advanced chemoreception (5–7)—all attributes typically associated with snakes. This convergence raises fundamental questions about how and why particular traits have influenced squamate diversification more generally. Viewed across multiple traits, snakes nonetheless appear distinct from lizards with respect to ecology, morphology, and biogeography (8–10). These observations suggest that evolutionary dynamics in snakes are qualitatively different from those in lizards. If so, the origin of snakes is potentially consistent with a Simpsonian view of macroevolution (11, 12), whereby major biodiversity expansions occur through qualitative phase shifts into new adaptive zones. These phase shifts can be conceptualized as macroevolutionary “singularities”: patterns of rapid change across multiple organismic and ecological axes that, when viewed retrospectively through the prism of geological time, are sufficiently clustered together so as to seem virtually instantaneous. The term “singular” also refers to the fact that these transformations typically appear unpredictable from prior character states and phylogenetic position alone; such transitions have been documented within birds (13, 14), mammals (15), and other taxa (16). Here, we characterize the tempo and mode of ecological and morphological innovation across squamate reptiles to address the role of macroevolutionary singularities in generating large-scale patterns of lizard and snake biodiversity. In particular, we test the extent to which phenotypic shifts have predictable consequences for evolutionary diversification across squamates. Approach We constructed a genomic backbone phylogeny for 1018 species of squamates, sequencing an average of 4.4 Mb across 4945 loci per taxon (figs. S1 and S2 and data S1). This phylogeny was then used as a scaffold upon which we added additional species from GenBank, yielding a species-level, dated phylogeny containing 6885 of the 10,759 squamate taxa (fig. S3 and data S2). We then time-calibrated a phylogenomic tree subsampled to 134 tips that spanned 31 fossil calibrations (figs. S4 and S5 and data S1) and used the resulting node dates as secondary calibrations for our full tree (fig. S6). With this tree, we quantified macroevolutionary dynamics across a range of ecological, morphological, and environmental traits. Traits were collated from a variety of sources and augmented with primary natural history data from our field- and museum-based research programs (17), including a dietary dataset (n = 68,547 records) from preserved stomach contents and field observations that spanned 1314 species of snakes and lizards. For each species, we then computed a simple statistical index of net innovation, Ψ, defined as the absolute difference in phenotype between the focal species and the inferred ancestral state for all extant squamates (17). We calculated indices for net trophic innovation (Ψdiet), morphological innovation in skull shape (Ψskull), presacral vertebral count (Ψvert), body elongation (Ψelong), and chemosensory processing (Ψchem). For the same traits, we also computed an index of absolute, branch-specific change along individual branches (fig. S7). To estimate evolutionary rates, we developed a tip-rate metric for univariate and multivariate phenotypic data that is similar to the widely used “diversification rate” (DR) statistic for speciation rate (18); we refer to this metric as the “TR” statistic (17). We then used a variance-partitioning analysis to identify nodes that best account for species-level phenotypic variation [canonical phylogenetic ordination (CPO) (19)]. We also characterized heterogeneity in phenotypic macroevolution with multiprocess evolutionary models that allowed for shifts in both (trait) state and evolutionary rates, in which “state shifts” are defined as large jumps in phenotype on individual branches (17). Results Phenotypic innovation across snakes and lizards Snakes have undergone large transformations along multiple phenotypic axes (Figs. 1 and 2 and figs. S7 to S10) relative to other squamates. These shifts distinguish them both quantitatively and qualitatively from the ancestral squamate phenotype and from their closest living (nonsnake) relatives. Estimates of net innovation range from 1.6- to 3-fold higher in snakes relative to lizards (Fig. 1 and fig. S8). These results suggest that the origin or early diversification of snakes was associated with massive shifts in traits associated with feeding, locomotion, and sensory processing. Fig. 1. Phenotypic innovation and evolutionary rates across squamates. Net innovation (Ψ) and evolutionary rate (TR) are shown across 246 squamate clades (bottom), subsampled from our full time-calibrated phylogeny of 6885 species (fig. S3). Snakes show greater phenotypic innovation and faster rates of evolution for innovation in skull shape (Ψskull), elongation (Ψelong), and diet composition (Ψdiet); these results are even more striking for colubriform snakes (node L). Tip values are residuals from tree-wide median value; additional traits are shown in fig. S8. Fig. 2. Phase shifts associated with the early evolution of snakes explain trait variation across extant squamates. (Top row) Multiprocess models generally find strong support for major phase shifts in both trait state and rates associated with all snakes (red) or alethinophidian snakes (orange; 88% of snake diversity). (Bottom row) Cumulative trait variance across extant squamates explained by discrete phase shifts on single branches, as inferred from two distinct unsupervised learning methods. The total variance explained by five largest shift nodes (top row) is shown as triangles; results from stepwise canonical phylogenetic ordination are shown as squares. Individual node effects account for much less variance in climate (far right) relative to other traits. Rates for morphological and ecological traits generally increased early in the evolutionary history of snakes (Fig. 1). Snakes occupy distinct morphological space and exhibit elevated rates of morphological evolution relative to lizards, as evidenced by their greater body elongation (mean snake elongation index and rate >6× and >24× that of lizards; fig. S11), higher vertebral counts (mean count and rate for snakes >5× and >80× that of lizards; figs. S11 and S12), highly distinctive skull shape [mean snake rate >3× that of lizards; fig. S11 (9)], and greater rate of body mass evolution (snake rate >12× that of lizards; fig. S13). Patterns of morphological evolution are mirrored by ecological trait evolution: The rate of trophic niche evolution was 3.2-fold faster in snakes than in lizards, and snake diets have diverged much more from the ancestral squamate diet relative to lizards (Fig. 1). Across a range of traits and rates, both CPO and multiprocess models reveal that much of the phenotypic variation across snakes and lizards can be explained by a single event that occurred early in the evolutionary history of snakes (Fig. 2 and figs. S14 and S15). Multiprocess phenotypic models generally recovered a phase shift in both rate and state associated with the ancestor of extant snakes or an associated early divergence within snakes (Fig. 2 and figs. S16 and S17), implying both decoupled rate dynamics in snakes relative to other squamates and also a major shift (jump) in phenotypic state. These findings are consistent with those of several recent studies that demonstrated phase shifts in the tempo and mode of cranial evolution associated with the origin and early radiation of snakes (8, 20). Trophic structure of squamate biodiversity Snakes occupy much greater dietary space relative to lizards (Fig. 3A), and their diets are generally nonoverlapping owing to the disproportionate consumption of vertebrate prey by snakes (Fig. 3B and figs. S18 and S19). Snakes also use an aquatic and semiaquatic prey base that is largely untouched by lizards (separation along diet PC 2, Fig. 3, A and B, and fig. S18) (PC, principal component). Although snakes as a whole use a greater diversity of food resources than lizards, the diets of individual snake species are consistently narrower than those of lizards (Fig. 3D). Snakes have evolved a range of phenotypes to specialize on viscous prey (worms, slugs), slippery prey (eggs, eels, and caecilians), and noxious and dangerous prey (e.g., venomous snakes, mammals, centipedes, and scorpions), as well as snails and other “armored” resources (Fig. 3, A and B). Fig. 3. Fundamental ecological differences between snakes and lizards. (A) Multidimensional trophic niche as inferred from 68,547 individual squamates (stomach contents, field observations). Individual points correspond to species (n = 1314); point size denotes dietary-niche breadth. (B) Similarity path through diet space as inferred by principal graph analysis, illustrating taxonomic structure of resource differences between snakes and lizards. Nodes (circles) are groupings of species that consume similar resources; colors represent fractional resource use of each inferred node, and node sizes are proportional to the number of species assigned to the group. (C) Apparent dietary overlap between some snakes and lizards (A) masks differences in the ways that these groups use invertebrate prey. Arthropod-feeding snakes tend to eat spiders, centipedes, and scorpions (e.g., Sonora semiannulata and Tantilla nigriceps), or soft-bodied larval insects (e.g., Amerotyphlops reticulatus), and they also consume far fewer adult insects relative to lizards. (D) Dietary-niche breadths are much greater for lizards than for snakes, even after accounting for intraspecific sampling variability. A small number of lizards (e.g., some monitor lizards, Heloderma, and Lialis) feed heavily on vertebrates, mainly exploiting prey already used by snakes. By contrast, finer partitioning of dietary categories among arthropod-feeding squamates (Fig. 3C) reveals that snakes and lizards consume largely nonoverlapping resources, with blindsnakes feeding almost exclusively on insect brood—larval and pupal ants and termites in particular—and with several other snake lineages specializing on spiders, centipedes, and scorpions. Conversely, arthropod-feeding lizards consume far more adult insects spanning multiple taxonomic categories, and lizard niche breadths are broader than those of arthropod-feeding snakes (Fig. 3C). Previous analyses of trophic macroevolution across lizards (7) have formulated the “deep-history” hypothesis of squamate diets, in which resource use is deeply conserved, in contrast to dynamic patterns of trophic niche evolution observed in some vertebrate radiations (21–23). Our diet analyses recovered elements of this hypothesis (7, 24) (fig. S20), but this legacy effect is dwarfed by the trophic shifts and expansions that have occurred in snakes throughout the Cenozoic (25). The origin of alethinophidian snakes (all snakes but blindsnakes; 88% of snake species; Fig. 2) accounts for nearly 40% of the variance in species-level diet state across squamates (fig. S14G). This shift, accompanied by an overall acceleration in the rate of trophic niche evolution in colubriform snakes (Fig. 1, TRdiet), led to a dramatic expansion of the squamate trophic universe. Overall, our results highlight the power of primary natural history data obtained from museum specimens and field observations to reveal major shifts in the ecological structure of the biota. Climate and life-history evolution Climatic niche and life history traits do not appear to be evolving along distinct evolutionary trajectories in snakes relative to lizards, thus departing from patterns observed for morphology and diet (Fig. 2). We find high lability of a key life-history trait (parity mode), and in climatic niche parameters (figs. S8 and S9). Despite some phylogenetic signal in climatic niche parameters (figs. S14 and S15), there is little evidence that such conservatism persists across large phylogenetic scales (figs. S21 and S22). Variation in climatic niche across squamates thus cannot be explained by deep divergences in their evolutionary past (Fig. 2 and figs. S14L and S15R). Speciation rates in lizards and snakes We quantified speciation rates across squamates, using phylogenetic imputation to infer placements for the 3872 squamate species for which genetic data were not available [fig. S23, (17)]. Snakes show substantially elevated rates of speciation relative to lizards [mean lizard λCLaDS = 0.08, λBAMM = 0.09; snake λCLaDS = 0.18, λBAMM = 0.21 (CLaDS, cladogenetic diversification rate shift model; BAMM, Bayesian analysis of macroevolutionary mixtures)] (Fig. 4 and figs. S24 and S25D), including other well-studied lizard clades thought to be the result of rapid radiation (e.g., Anolis and sphenomorphine skinks) (Fig. 4, C and D). Approximately 45% of the variance in tip-level speciation rates across squamates is explained by the node spanning colubriform snakes (λCLaDS = 0.20; λBAMM = 0.23; figs. S14 and S26). Outside of snakes, the most important rate shift involved the ancestor of the species-rich Liolaemus lizard clade from montane and arid South America (~260 species), which accounts for ~11% of the variance in tip-level rates. For higher taxa, speciation rate is correlated with species richness (n = 119 subfamilies; Spearman’s r = 0.63) (Fig. 4C), but this positive correlation is driven by the presence of very small clades with low speciation rates. For clades with at least 50 species—collectively accounting for 96% of global squamate diversity—there is effectively no relationship between richness and rate (n = 42, r = 0.03). Similar decoupling between speciation rates and diversity patterns, both for taxonomic groups and geographic regions, has now been observed in a wide range of taxa (18, 26, 27). Fig. 4. Speciation rates in snakes are consistently elevated relative to lizards. (A) Subsampled phylogeny of 246 clades (as shown in Fig. 1) illustrating (B) speciation rates (CLaDS) relative to tree-wide median rate. Rates for each tip represent the mean rate for all species assigned to each terminal clade. (C) Species richness and tip-averaged speciation rate for major clades within squamates (subfamily level). (D) Median and interquartile range for tip speciation rates across all snakes and lizards and for several key groups. (E) Speciation rates for individual species as a function of body elongation. Snakes are elongate and have fast rates of speciation (D), but elongate and/or limb-reduced lizards show no trends toward faster rates. Phylogenetic distribution of limb reduction is indicated by blue branches in the phylogeny shown in (A). (F) Phylogenetic regression analysis reveals minimal effect of any phenotypic traits on speciation rates (R2 < 0.01). We then tested whether previously proposed key innovations predict speciation rates across squamates more generally. We found that individual traits had minimal ability to explain speciation-rate variation (Fig. 4F and fig. S25E), even for those traits that have evolved multiple times across squamates [maximum coefficient of determination (R2) = 0.01]. To the extent that these traits contributed to snake diversification, their influence is statistically confounded with a macroevolutionary singularity associated with the origin of snakes (Fig. 4E and fig. S27) (28). We also considered several biogeographic predictors of speciation rate, finding no evidence for associations with latitude (fig. S28) or biogeographic region (fig. S29). Similar to other vertebrate clades (18, 26), the latitudinal gradient in squamate diversity appears largely decoupled from speciation rates, and geographic variability in speciation rate is largely a function of the relative fraction of snakes versus lizards in the biota. Conclusions Global squamate biodiversity has been heavily shaped by a singularity in macroevolutionary dynamics that occurred in association with the origin of snakes and with their most successful constituent clade (Colubriformes, 3100 species) (Fig. 1), a radiation that shows no sign of slowing toward the present (25). Numerous hypotheses have been proposed to account for the dramatic evolutionary radiation of snakes, including shifts in feeding mechanisms, extreme cranial kinesis, body elongation, limb reduction, and venom (8, 25, 29, 30). Furthermore, snakes show several genomic attributes, such as transposable element proliferation (31) and metabolic protein redesign (32), that might contribute to evolutionary versatility of the general snake body plan (20). However, our results highlight the challenge of linking specific innovations to the overall “success” of the snake phenotype. Replicated innovations in our dataset, including chemosensory innovation, limb loss, and body elongation, show no predictable effects on speciation rate (Fig. 4). Moreover, counterfactual experiments have occurred throughout squamate evolutionary history that support a decoupling between innovation per se and macroevolutionary regime shifts. For example, lizard (nonsnake) lineages that have evolved potent venom (Heloderma) have scarcely diversified, and perhaps the most extreme instance of cranial kinesis in a nonsnake squamate occurs in a species-poor group of legless geckos (33). Conversely, one lineage of snakes—the splitjaw snakes (Bolyeridae)—has further increased the flexibility of the alethinophidian trophic apparatus through dramatic skeletal innovations not seen in any other vertebrates (34). Yet this innovation was unaccompanied by any substantive ecological or species diversification, and the lineage is currently represented by a tiny clade of endangered or recently extinct island endemics (Casarea dussumieri and Bolyeria multocarinata). Snakes thus appear to represent an ongoing adaptive radiation characterized by sustained ecological and species diversification that was triggered ultimately by one or more unknown and perhaps unknowable singular events. The principal challenge in resolving the causal basis of such singularities involves a lack of phylogenetic replication. By focusing on traits specific to squamates (e.g., cranial kinesis and venom), evolutionary biologists are necessarily limited to a small number of statistically independent data points or contrasts (28). However, some hypotheses, particularly those associated with genomic change or molecular evolutionary rates (20), could be tested across vastly greater phylogenetic scales (e.g., all vertebrates or metazoans). Likewise, the development of taxon-independent ontologies to describe key processes (e.g., sexual selection and trophic flexibility) might facilitate comparison of putative causal processes or agents across diverse branches of the Tree of Life. Nonetheless, the action of these and other innovations may be highly contingent on geographic and other circumstances peculiar to individual clades (35, 36). The view of phenotypic evolution emerging from squamates and other taxa (15, 20, 37) is that many of the most spectacular changes in the history of life have involved macroevolutionary singularities: rare, transformative events that are unpredictable from evolutionary time, phylogenetic position, and other factors. In this study, the recurrent evolution of snake-like traits in other groups of nonsnake lizards has failed to generate comparable evolutionary outcomes, suggesting that replicated patterns of adaptive radiation observed in many groups of organisms (35, 38) may be superseded at deeper phylogenetic scales by systemic shifts that ultimately give rise to higher taxa (11). The extent to which such shifts are qualitatively distinct from those associated with young radiations is likely to remain a challenging problem. Perhaps most importantly, the pruning effect of extinction, through the selective elimination of ecologically and phenotypically intermediate clades, may exacerbate the distinctiveness of clades that comprise the “survivors” that we observe in the present day (39). Thus, transformation of the biota through time may be partly attributable to phenotypic changes that confer increased survivorship at the species or clade level (40, 41). Determining why snakes and other groups—from bats to beetles, and from angiosperms to acanthomorph fishes—have experienced such dramatic shifts in evolutionary tempo and mode is, as Darwin put it, an “abominable mystery.” Yet the major features of biological diversity may owe more to these revolutionary events than to the causal structures we infer by extrapolating contemporary microevolution through geological time. Acknowledgments We thank G. Schneider and F. Kraus for sample access, P. Skipwith and S. Potter for logistical support, and A. Devault, J. Enk, M. R. Marchan-Rivadeneira and the team at UMich ARC for technical support. We also thank A. Davis Rabosky, members of the Rabosky Lab, and two anonymous reviewers for comments and suggestions that substantially improved this manuscript. Approximately 80% of the dietary records in our dataset came from preserved voucher specimens, and we thank the curatorial staff of the many natural history collections worldwide that made this research possible. For photographs, we thank T. Schramer, R. Recoder, M. T. Rodrigues, J. Grummer, J. Farquhar, J. Crowe-Riddell, and A. Davis Rabosky. Pictures by R. Brown and B. Trapp were modified to compose manuscript figures. Funding: This work was supported by NSF Division of Environmental Biology grant 1754398 (D.L.R. and S.S.); the Packard Fellowship for Science and Engineering (D.L.R.); Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (G.R.C.); the National Council for Scientific and Technological Development (G.R.C.); the FAPDF (G.R.C.); California State University, Dominguez Hills RSCA (S.S.); NSF Division of Environmental Biology grant 1754425 (G.C.C.); NSF Division of Biological Infrastructure grant 0905765 (R.A.P.) and 1930030 (S.A.S.); NSF Division of Environmental Biology grant 1441719 (R.A.P.); the J. William Fulbright Fellowship (T.J.C.); NSF Division of Environmental Biology grant 1501711 (T.J.C.); Australian Research Council (C.M.); Australian Research Council grant DE130101567 (M.E.H.J.); National Council for Scientific and Technological Development grant 304715/2021-2 (D.O.M.); Fundação de Apoio à Pesquisa do Estado da Paraíba-PB (D.O.M.); Coordenação de Aperfeiçoamento de Pessoal de Nível Superior-PRINT UFPB grant AUXPE 88881.312082/2018-01 (D.O.M.); NSF Division of Environmental Biology grants 0415430, 9200779, and 9505518 (L.J.V.), and a postdoctoral fellowship with the Environmental Resilience Institute at Indiana University (P.O.T.). Author contributions: Project conceptualization and planning: D.L.R., P.O.T., S.S., M.C.G., and G.C.C. Data collection: S.S., T.JC., M.R.G., G.C.C., L.B.Q.C., G.R.C., N.S., M.E.H.J., P.O.T., D.L.R., M.C.G., and L.J.V. Funding acquisition: D.L.R., R.A.P., G.C.C., G.R.C., and S.S. Resources: D.L.R., R.A.P., G.C.C., L.B.Q.C., G.R.C., N.D.P., S.C.D., C.M., D.O.M., E.R.P., S.A.S., and L.J.V. Method development: M.C.G., D.L.R., and P.O.T. Data analysis: P.O.T., S.S., M.C.G., D.L.R., and G.C.C. Data visualization: P.O.T., S.S., M.C.G., I.P., and D.L.R. Writing of primary draft: D.L.R., P.O.T., and S.S. Editing, commenting on, and approving final draft: All authors but E.R.P. (deceased). Competing interests: The authors declare that they have no competing interests. Data and materials availability: Accession numbers (NCBI) for genomic data are available in supplemental data S1. Data and scripts used in data processing, analysis, and visualization are available on Dryad (42), Zenodo (43), and GitHub (https://github.com/macroevolution/squamata). License information: Copyright © 2024 the authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original US government works. https://www.science.org/about/science-licenses-journal-article-reuse Supplementary Materials This PDF file includes: Materials and Methods Figs. S1 to S44 Tables S1 to S5 References (44–249) Download 14.33 MB Other Supplementary Material for this manuscript includes the following: MDAR Reproducibility Checklist Download 135.95 KB Data S1 to S3 Download 786.28 KB References and Notes 1 C. L. Camp, Classification of the Lizards. Bull. Am. Mus. Nat. Hist. 48, 289–480 (1923). GO TO REFERENCE Google Scholar 2 T. Townsend, A. Larson, E. Louis, J. R. Macey, Molecular phylogenetics of squamata: The position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree. Syst. Biol. 53, 735–757 (2004). GO TO REFERENCE Crossref PubMed Web of Science Google Scholar 3 H. W. Greene, Snakes: The Evolution of Mystery in Nature (University of California PressUniv. of California Press, 1997). GO TO REFERENCE Crossref Google Scholar 4 J. J. 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